Predicted miRNA-target interaction search in Chromosome

Species	Human Mouse Rat	Select your specie of interest
Select miRNA Chromosome	Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5 Chromosome 6 Chromosome 7 Chromosome 8 Chromosome 9 Chromosome 10 Chromosome 11 Chromosome 12 Chromosome 13 Chromosome 14 Chromosome 15 Chromosome 16 Chromosome 17 Chromosome 18 Chromosome 19 Chromosome 20 Chromosome 21 Chromosome 22 Chromosome X Chromosome Y	Select mRNA Chromosome	Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5 Chromosome 6 Chromosome 7 Chromosome 8 Chromosome 9 Chromosome 10 Chromosome 11 Chromosome 12 Chromosome 13 Chromosome 14 Chromosome 15 Chromosome 16 Chromosome 17 Chromosome 18 Chromosome 19 Chromosome 20 Chromosome 21 Chromosome 22 Chromosome X Chromosome Y

Gene Region

Promoter	Upstream flanked	Upstream flanking region (assumed promoter) Max. 10kb is allowed
5' UTR CDS 3'UTR		Restrict your search of miRNA binding sites within specific region(s)

Options

Transcripts	All Longest	Select either all or the longest transcript of gene(s)
Min seed length		Minimum number of nucleotides of miRNA seqence through which they can make one or more interactios with their possible targets
pValue		A probability distribution of random matches of a subsequence in the given sequence

Comparative analysis by 8 prediction programs

DIANA-mT	miRanda	miRDB	miRWalk	RNAhybrid
PICTAR4	PICTAR5	PITA	RNA22	TargetScan