Predicted gene-miRNA interaction search

Species	Human Mouse Rat	Select your specie of interest
Identifiers		Enter GeneSymbols OR EntrezIDs
Upload a file		OR Choose from a File (example list)

Gene Region

Promoter	Upstream flanked	Upstream flanking region (assumed promoter) Max. 10kb is allowed
5' UTR CDS 3'UTR		Restrict your search of miRNA binding sites within specific region(s)

Options

Transcript	All Longest	Select either all or the longest transcript of gene(s)
Min Seed Length		Minimum number of nucleotides of miRNA seqence through which they can make one or more interactios with their possible targets
pValue		A probability distribution of random matches of a subsequence in the given sequence

Comparative analysis by 8 prediction programs

DIANA-mT	miRanda	miRDB	miRWalk	RNAhybrid
PICTAR4	PICTAR5	PITA	RNA22	TargetScan