Microarray-Analytik

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Microarray-Links

Software for microarray data analysis

• SAS JMP Genomics a unique desktop product from SAS for powerful statistical analysis
• Bioconductor ProjectBioconductor is an open source project for the analysis of genomic data.
• GenMAPP can visualize gene expression and other genomic data on maps representing biological pathways.
• R-Project is a freely available language and environment for statistical computing and graphics
• Significant Analysis of Microarrays (SAM)is a Supervised learning software for genomic expression data mining
• Gene Set Enrichtment Analysis (GSEA) is a software package for pathway-analysis

Software category index

• J.F.Leung’s
• Stanford Microarray Database

Databases

• Ensembl produces and maintains automatic annotation on selected eukaryotic genomes.
• NCBI with gene and protein sequence information.
• miRWalk is a comprehensive database on mammalian miRNAs.
• KEGG Pathway is a collection of manually drawn pathway maps
• MSigDB is a collection of gene sets for use with GSEA software.
• The Vertebrate Genome Annotation (VEGA) database
• Pathguide contains information about 240 biological pathway resources
• The Gene Ontology provides describes gene and gene product attributes in any organism.
• BRENDA - The Comprehensive Enzyme Information System
• The Eukaryotic Promoter Database is an annotated non-redundant collection of eukaryotic POL II promoters
• Gene-Regulaion.com - Public Databases for Academic and Non-profit Organizations
• DrugBank - resource that combines detailed drug data with comprehensive drug target.
• iHOP - Information hyperlinked over proteins
• GeneAtlas - contains relevant information with respect to gene mapping and genetic diseases.

Tools

• XplorMed - Bibliographische Suche in Medline
• GoPubMed - Ontology-based Literature search
• BioMart Abfrage von Annotationsdaten mit zahlreichen Filtermöglichkeiten
• PubGene literature-based search for connections between genes and proteins